BiaPy
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Get started

  • Installation
  • How it works
  • Configuration
  • Select workflow
  • FAQ

Workflows

  • Semantic segmentation
  • Instance segmentation
  • Detection
  • Denoising
  • Super-resolution
  • Self-supervision
  • Classification

Tutorials

  • Stable DNN architectures for mitochondria segmentation
  • CartoCell, a high-throughput pipeline for accurate 3D image analysis
  • MitoEM dataset: large-scale 3d mitochondria instance segmentation
  • NucMM dataset: 3d neuronal nuclei instance segmentation

How to contribute

  • General guidelines
  • Add new workflow
  • Add pre/post processing

API

  • config
  • data
  • engine
    • Init
    • Base Workflow
    • Classification Workflow
    • Denoising Workflow
    • Detection Workflow
    • Instance Segmentation Workflow
    • Metrics
    • Self Supervised Workflow
    • Semantic Segmentation Workflow
    • Super Resolution Workflow
    • Train Engine
    • schedulers
  • models
  • utils

Bibliography

  • Bibliography
BiaPy
  • »
  • engine
  • Edit on GitHub

engineΒΆ

  • Init
  • Base Workflow
  • Classification Workflow
  • Denoising Workflow
  • Detection Workflow
  • Instance Segmentation Workflow
  • Metrics
  • Self Supervised Workflow
  • Semantic Segmentation Workflow
  • Super Resolution Workflow
  • Train Engine
  • schedulers
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© Copyright 2023, Daniel Franco-Barranco. Revision 5e89cda6.

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