Instance segmentation

This is page dedicated to step-by-step tutorials on how to use BiaPy for instance segmentation on specific use cases. Some of them have already been published in scientific conferences or journals, or are part of ongoing research.

• CartoCell, a high-throughput pipeline for accurate 3D image analysis (Paper)
• MitoEM dataset: large-scale 3d mitochondria instance segmentation (Paper)
• NucMM dataset: 3d neuronal nuclei instance segmentation (Paper)
• SpineDL-Neuron: Neuron segmentation in the mouse spinal cord
• Ovarian Reserve: 3D Instance Segmentation of Oocytes